Insertion junction: CLIP2.001292_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.001292
Chromosome:chromosome 10
Location:1184625
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g425900 LHCA5 (1 of 2) K08910 - light-harvesting complex I chlorophyll a/b binding protein 4 (LHCA4); Light-harvesting protein 5 of photosystem I gene_edge/mRNA_edge/3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGACCGGTACTCTTTCTGCTTGAAATCACTAGGAAAGCTGACGGATTT
Internal bar code:TAGTCCAGTGGCTACTTCCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1050
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCAAGAGGGGAGGTCTAG
Suggested primer 2:AGCGCTGACTGGAACTTTGA