Insertion junction: CLIP2.001417_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001417
Chromosome:chromosome 5
Location:2350751
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre05.g238332 PSAD,PSAD1 Photosystem I reaction center subunit II, 20 kDa; (1 of 1) K02692 - photosystem I subunit II (psaD) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCAGCAGCTGGACCGCCTGTACCATGGAGAAGAGCTTTACTTGCCGGG
Internal bar code:ATCACTGTACACGATAGCTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:285
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAGTATGGCATTGGCAGA
Suggested primer 2:AGGGGGATCTGGGAATTGGA