Insertion junction: CLIP2.001429_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001429
Chromosome:chromosome 6
Location:7155259
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g298300 PPR2,MRL1 rbcL mRNA stabilization factor; (1 of 2) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTTGACAGAGGCTGCATGTCACTGTTCCCTGTGCCGCACCCGCAACGTC
Internal bar code:ATTTGGCCGCCAGGTGTATTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1124
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GCATCTGTCCATCAACGTGC
Suggested primer 2:GTCCACTTGTGTGTTCACGC