Insertion junction: CLIP2.001793_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001793
Chromosome:chromosome 13
Location:142034
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g562850 THF1,PSB29 Thylakoid Formation 1; (1 of 1) PTHR34793:SF1 - PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCACGTAACCAGTAACTGCACAAACAGCCTGCTCATGTGAACTTTTGTG
Internal bar code:ATTAAGATAGTACTAAACACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1543
LEAP-Seq percent confirming:87.8788
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGGTAGCGTTTTTGTGCG
Suggested primer 2:GACGGACATCCTTTCCAGCA