Insertion junction: CLIP2.001794_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.001794
Chromosome:chromosome 12
Location:2201016
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g509000 MAPK3 Mitogen-Activated Protein Kinase 3; (1 of 3) K04371 - mitogen-activated protein kinase 1/3 (MAPK1_3) 3'UTR
Cre12.g509050 PPL1,PSBP3 PsbP-like protein of thylakoid lumen; (1 of 1) PTHR31407:SF4 - PSBP-LIKE PROTEIN 1, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCTGCTTACAATCAGCACACCTGCCTGCATGCTATGGCCACCTACAGG
Internal bar code:GCTTTGTATCGCGGTGTGCACT

Confirmation - LEAP-Seq

LEAP-Seq distance:3482
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:77
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGCTTAGGAGTCGACGAG
Suggested primer 2:CGCTGTAGTGGATACGGACC