Insertion junction: CLIP2.001936_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001936
Chromosome:chromosome 2
Location:7007325
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g389615 MAC1 psaC mRNA stabilization factor; (1 of 1) PTHR23083//PTHR23083:SF403 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCCACGTTTCAGCACGCGCCGCTGTACCAGGCCTGGGCGGAATTTGAG
Internal bar code:TGGTCACCTGATCAAAAACGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2273
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTACGGCTGCTCATGATC
Suggested primer 2:CGCGTGAGGCTTAGACTGAT