Insertion junction: CLIP2.001939_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001939
Chromosome:chromosome 12
Location:9606380
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g539650 (1 of 1) PF00530//PF08016 - Scavenger receptor cysteine-rich domain (SRCR) // Polycystin cation channel (PKD_channel) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCAGTCGGACACAGTGCATGTTACCAGACCATCCAGCCGCGACACAGC
Internal bar code:GAGGTCAAATAAATAACACGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1060
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CTACGACCCAAAACGAGCCT
Suggested primer 2:AATAACAACGGGCGCAGGTA