Insertion junction: CLIP2.001972_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001972
Chromosome:chromosome 3
Location:4710592
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177450 (1 of 1) IPR003729//IPR022772//IPR024053 - Bifunctional nuclease domain // von Hippel-Lindau disease tumour suppressor, beta/alpha domain // von Hippel-Lindau disease tumour suppressor, beta domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGCATCCTGAGCCGCGCGGTCCGCCTCCGCTTCTGCCGCCTCGTCGAA
Internal bar code:GAGGATCAAGCTCTGGGCGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:5408
LEAP-Seq percent confirming:95.9184
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCATGGCAAGTGTGTGTG
Suggested primer 2:ATCAAACGCACCAAACAGGC