Insertion junction: CLIP2.002598_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.002598
Chromosome:chromosome 13
Location:909829
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567750 PRP18 Pre-mRNA splicing factor; (1 of 1) K12817 - pre-mRNA-splicing factor 18 (PRPF18, PRP18) 5'UTR
Cre13.g567800 PPP41,PP2A2 (1 of 1) K11584 - serine/threonine-protein phosphatase 2A regulatory subunit B' (PPP2R5); Protein phosphatase 2A regulatory B subunit 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCGAAGTGGAGCTCCTAAAGGGCGCGGTAAGGGGCGCTAATTTACCCG
Internal bar code:TACAACGATATGCGCATCTAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2563
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAATCATGTTGGGGCCGT
Suggested primer 2:CGCTTGATTTCCTTCTCGCG