Insertion junction: CLIP2.002956_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.002956
Chromosome:chromosome 17
Location:421824
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g698750 RAA12,OPR104 psaA mRNA trans-splicing factor of subcomplex I; (1 of 781) IPR000104 - Antifreeze protein, type I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGCGGGGGTGCGGGTGATGGCCAGGGCAGGGGTGCGGGCGGCGGCGAG
Internal bar code:AGACATCATAGTCTAGCTCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:571
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGTGAACGGTGTGCGTTG
Suggested primer 2:AAACGAAGAAGCGCCAGGTA