Insertion junction: CLIP2.002956_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002956
Chromosome:chromosome 17
Location:421825
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g698750 RAA12,OPR104 psaA mRNA trans-splicing factor of subcomplex I; (1 of 781) IPR000104 - Antifreeze protein, type I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGCCCCCGCCCCCGCCCCCGCCGCATCCTGACTTGCGCCGCGTTGCCC
Internal bar code:AGACATCATAGTCTAGCTCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:490
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:AAACGAAGAAGCGCCAGGTA
Suggested primer 2:ATTGTGAACGGTGTGCGTTG