Insertion junction: CLIP2.003102_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003102
Chromosome:chromosome 16
Location:6045170
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g678000 CPL22 (1 of 4) PF11891 - Domain of unknown function (DUF3411) (DUF3411); Conserved in the Plant Lineage 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCGGAGCAACGATGCCGCCCACTCTCCATGATGCACGCCATTCCATCA
Internal bar code:GTCGTAGAGTGGGTTCCAGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1470
LEAP-Seq percent confirming:93.1034
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGGAGCTAGGACGATGAC
Suggested primer 2:ACCCAGAAGCAAGTACCTGC