Insertion junction: CLIP2.003256_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003256
Chromosome:chromosome 12
Location:566703
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g493950 PRPS13 Chloroplast ribosomal protein S13; (1 of 1) K02952 - small subunit ribosomal protein S13 (RP-S13, rpsM) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCCCCGCCACCCGGCTGCATTTCCATACAGTAACCATTGATAGCCGCA
Internal bar code:ACGATTTAAGGATGAGCAAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1880
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GGGCGTGGAGAACAAGAAGA
Suggested primer 2:TTTAATGCGGCCTCAGCTCA