Insertion junction: CLIP2.003530_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.003530
Chromosome:chromosome 2
Location:2007201
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g088400 DEG1,DEG1A (1 of 3) PTHR22939:SF81 - PROTEASE DO-LIKE 1, CHLOROPLASTIC; Deg protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGAAGAATACCCCCAGCGTGGTCAACGTTACGAACCTGGCGGTCAAACG
Internal bar code:GGGTTTCAACGAACTTTGCCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:2324
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCACACTCAAACACATGT
Suggested primer 2:CTGAGCGAGCTAGCATGTGA