Gene: Cre02.g088400

Overview

Common name:DEG1,DEG1A
Defline:(1 of 3) PTHR22939:SF81 - PROTEASE DO-LIKE 1, CHLOROPLASTIC; Deg protease
Description:serine protease, trypsin family, DegP type (HtrA) (protease Do) most similar to At3g27925 (DegP1) and to degP5, localized in thylakoid membrane, lumen side [PMID: 15137941]; expressed in Chlamy; probably results from a recent duplication of DEG1 gene which yielded also divergent DEG1B; one C-terminal PDZ domain, probably involved in substrate recognition and protease activation [PMID: 15137941], no DegP C-term domain
Synonyms:Cre02.g088400.t1.1,g1646.t1,DEG1A,DEG1
Chromosome:chromosome 2

Protein Localization

A plasmid for expressing Cre02.g088400 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre02.g088400-Venus-3xFLAG

No localization data is available in our datasets for this protein.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.003343_1 CLIP2.003343 CDS 80 6.1
CLIP2.003343_2 CLIP2.003343 CDS 80 6.1
CLIP2.003530_1 CLIP2.003530 CDS 80 6.1
CLIP2.003530_2 CLIP2.003530 CDS 80 6.1
CLIP2.004683_1 CLIP2.004683 CDS 80 6.1
CLIP2.004683_2 CLIP2.004683 CDS 80 6.1
CLIP2.005081_1 CLIP2.005081 CDS 80 6.1
CLIP2.005081_2 CLIP2.005081 CDS 80 6.1
CLIP2.007279_1 CLIP2.007279 CDS 80 6.1
CLIP2.007279_2 CLIP2.007279 CDS 80 6.1
CLIP2.063815_1 CLIP2.063815 5'UTR 80 6.1
CLIP2.063815_2 CLIP2.063815 5'UTR 80 6.1
LMJ.RY0402.048808_1 LMJ.RY0402.048808 3'UTR 73 5.5
LMJ.RY0402.057845_1 LMJ.RY0402.057845 3'UTR 95 5.5
LMJ.RY0402.057845_2 LMJ.RY0402.057845 3'UTR 95 5.5
LMJ.RY0402.062316_1 LMJ.RY0402.062316 CDS 73 5.5
LMJ.RY0402.077818_1 LMJ.RY0402.077818 CDS 95 5.5
LMJ.RY0402.077818_2 LMJ.RY0402.077818 CDS 95 5.5
LMJ.RY0402.157553_1 LMJ.RY0402.157553 3'UTR 95 5.5
LMJ.RY0402.157553_2 LMJ.RY0402.157553 3'UTR 95 5.5
LMJ.RY0402.164305_1 LMJ.RY0402.164305 CDS 73 5.5
LMJ.RY0402.189088_1 LMJ.RY0402.189088 3'UTR 73 5.5
LMJ.RY0402.189088_2 LMJ.RY0402.189088 3'UTR 73 5.5
LMJ.RY0402.197772_1 LMJ.RY0402.197772 3'UTR 95 5.5
LMJ.RY0402.197772_2 LMJ.RY0402.197772 3'UTR 95 5.5
LMJ.RY0402.215907_1 LMJ.RY0402.215907 5'UTR 95 5.5
LMJ.RY0402.215907_2 LMJ.RY0402.215907 5'UTR 95 5.5
LMJ.RY0402.253491_1 LMJ.RY0402.253491 intron 73 5.5
LMJ.SG0182.001946_1 LMJ.SG0182.001946 MULTIPLE_SPLICE_VARIANTS 75 5.3

Gene Annotations

PFAM:PF13180, PF13365
PANTHER: PTHR22939 PTHR22939:SF81
KEGG_ec:EC:3.4.21.107
KEGG_orthology:
KOG:KOG1320
Gene ontology terms::GO:0004252, GO:0005515, GO:0006508
Best arabidopsis TAIR name:AT3G27925
Best arabidopsis TAIR symbol:Deg1,DEGP1
Best arabidopsis TAIR defline:DegP protease 1
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Rose Bengal, screen 3 of 4 ( 82% confidence (FDR = 0.18))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.