Insertion junction: LMJ.RY0402.253491_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.253491
Chromosome:chromosome 2
Location:1999174
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre02.g088400 DEG1,DEG1A (1 of 3) PTHR22939:SF81 - PROTEASE DO-LIKE 1, CHLOROPLASTIC; Deg protease intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCCCACGTGACGACCCCCAAATCTTGCC
Internal bar code:CCATCACTCGCCTCGCTGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:496
LEAP-Seq percent confirming:97.9885
LEAP-Seq n confirming:1023
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ACAACAGGACCAGGACAAGG
Suggested primer 2:GGTGACGTCTGATGGTGTTG