Insertion junction: CLIP2.005081_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005081
Chromosome:chromosome 2
Location:2007199
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g088400 DEG1,DEG1A (1 of 3) PTHR22939:SF81 - PROTEASE DO-LIKE 1, CHLOROPLASTIC; Deg protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGATTTCAATGGTAAGCTGCTCCTCCGGCGTCATCCGCGGCTTGGCCATG
Internal bar code:CTGGATTTGCTTCTCTCGGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3116
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAGCGAGCTAGCATGTGA
Suggested primer 2:GCGCACACTCAAACACATGT