Insertion junction: CLIP2.003549_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003549
Chromosome:chromosome 12
Location:1431012
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488500 ARC6 Accumulation and replication of chloroplast; (1 of 2) PTHR33925//PTHR33925:SF3 - FAMILY NOT NAMED // PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCCATCCCCTCGCATCGACGCCTACATCCCTGTGTCTACATCTATGAC
Internal bar code:CAAGCCAACTTTAGGTGAGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:783
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GGTTCTGGATCTGGGTCTGC
Suggested primer 2:ATTGAGGTCGCAAGTGAGGG