Gene: Cre12.g488500
Overview
| Common name: | ARC6 |
| Defline: | Accumulation and replication of chloroplast; (1 of 2) PTHR33925//PTHR33925:SF3 - FAMILY NOT NAMED // PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC |
| Description: | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); heat shock protein binding / unfolded protein binding -COG484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] |
| Synonyms: | Cre12.g488500.t1.1,g12215.t1 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g488500 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g488500-Venus-3xFLAG
Imaged strain: CSI_LW08C3
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/not pyrenoid depleted
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002537_1 | CLIP2.002537 | CDS | 80 | 6.1 |
| CLIP2.002537_2 | CLIP2.002537 | CDS | 80 | 6.1 |
| CLIP2.003549_1 | CLIP2.003549 | intron | 80 | 6.1 |
| CLIP2.003549_2 | CLIP2.003549 | intron | 80 | 6.1 |
| CLIP2.003756_1 | CLIP2.003756 | CDS | 80 | 6.1 |
| CLIP2.003756_2 | CLIP2.003756 | CDS | 80 | 6.1 |
| CLIP2.003756_3 | CLIP2.003756 | CDS | 80 | 6.1 |
| CLIP2.003883_1 | CLIP2.003883 | CDS | 80 | 6.1 |
| CLIP2.003883_2 | CLIP2.003883 | CDS | 80 | 6.1 |
| CLIP2.004806_1 | CLIP2.004806 | intron | 80 | 6.1 |
| CLIP2.004806_2 | CLIP2.004806 | intron | 80 | 6.1 |
| CLIP2.066548_1 | CLIP2.066548 | 3'UTR | 63 | 6.1 |
| LMJ.RY0402.213036_1 | LMJ.RY0402.213036 | CDS | 73 | 5.5 |
| LMJ.RY0402.226871_1 | LMJ.RY0402.226871 | CDS | 95 | 5.5 |
| LMJ.RY0402.226871_2 | LMJ.RY0402.226871 | CDS | 95 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | PTHR33925 PTHR33925:SF3 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT5G42480 |
| Best arabidopsis TAIR symbol: | ARC6 |
| Best arabidopsis TAIR defline: | Chaperone DnaJ-domain superfamily protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.