Insertion junction: CLIP2.066548_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.066548
Chromosome:chromosome 12
Location:1427794
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre12.g488500 ARC6 Accumulation and replication of chloroplast; (1 of 2) PTHR33925//PTHR33925:SF3 - FAMILY NOT NAMED // PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC 3'UTR
Cre12.g488550 FKM8 DNA methylase in the FkbM family; (1 of 13) PF05050 - Methyltransferase FkbM domain (Methyltransf_21) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTTTAAAGCCTTGGCTGCCTGCCCTCCCCAAGTACAGCATTGCCTCCG
Internal bar code:CAGTGGTACCGTCACATGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1199
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCACTCTTTCAACGCCC
Suggested primer 2:ACTGCACGTAAATCCCAGGG