Insertion junction: CLIP2.003883_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003883
Chromosome:chromosome 12
Location:1429234
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488500 ARC6 Accumulation and replication of chloroplast; (1 of 2) PTHR33925//PTHR33925:SF3 - FAMILY NOT NAMED // PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGACCTGCGTGTCGCCTTCTATCTGCAGGTGAGGGGCGGCAGAAGAGAG
Internal bar code:TCACTGAATGTTTTTGTTTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2493
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GGCAGAGGAAGATGACGAGG
Suggested primer 2:AAGGGTGAGCAGATTCCAGC