Insertion junction: CLIP2.003663_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003663
Chromosome:chromosome 3
Location:4425101
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g175250 SQS,SQS1 Squalene synthase; (1 of 1) 2.5.1.21 - Squalene synthase / Squalene synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGAAAGAGGTGGGTTTCGGCAGCGGTGAGGCGGCGTTTGCGGTGGCGCA
Internal bar code:GTACATCATTATGCCTGTTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1796
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:AGCATACCACCTGCCTTGAC
Suggested primer 2:CGGCGCCTACTTCTACTACG