Insertion junction: CLIP2.003706_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.003706
Chromosome:chromosome 8
Location:1650514
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g365900 LHCSR1,LI818 (1 of 3) PTHR21649//PTHR21649:SF15 - CHLOROPHYLL A/B BINDING PROTEIN // SUBFAMILY NOT NAMED; Stress-related chlorophyll a/b binding protein 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTGGCAGTATACAGGACCATGCAACAATTGGAGAGACGGTCGGCCGAA
Internal bar code:GCTTCTTATTGGTGGGTGCCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1066
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:CACAACTGCAGTGTTTCGGG
Suggested primer 2:GAAGTCTGTTGGGTGGGGAG