Insertion junction: CLIP2.003747_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003747
Chromosome:chromosome 2
Location:6229549
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387000 CGL34 (1 of 4) PF11891 - Domain of unknown function (DUF3411) (DUF3411); Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAAGGAAGCGCCCACCAGCGCAGCGACCTGCTGACCACGCAATCTTGCA
Internal bar code:TGATTTGAACCTGACGAGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4074
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGCCCACGAATGCCTACA
Suggested primer 2:GCGGCAAACGTGAGACTTTT