Insertion junction: CLIP2.003810_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.003810
Chromosome:chromosome 8
Location:243361
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g358562 CPN20 Chaperonin 20; (1 of 2) PTHR10772//PTHR10772:SF0 - 10 KDA HEAT SHOCK PROTEIN // 20 KDA CHAPERONIN, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCTGCCCCCCCCCCCCGCTGCCAGGCCTCACCTCGAACTCTGTCCCCG
Internal bar code:TTTGTTTATCCTAGTGAATAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2138
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CACACACGCACACTCTCTCT
Suggested primer 2:CGTCGACTCCTGTTGTCACA