Insertion junction: CLIP2.003840_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.003840
Chromosome:chromosome 1
Location:1785506
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g009900 CDJ3 Chloroplast DnaJ-like protein 3; (1 of 2) IPR001080//IPR001623//IPR017896 - 3Fe-4S ferredoxin // DnaJ domain // 4Fe-4S ferredoxin-type, iron-sulphur binding domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGCCGGTGTCGAAGGAGGTATCTGGCATGTCGGCGGCTCCGGCCACGC
Internal bar code:GATATTATAACAGTTTCATCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3912
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:85
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:TTACACCCGTGTCCTGCTTC
Suggested primer 2:CAGCGCGTTTGGTGTACAAA