Insertion junction: CLIP2.003877_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.003877
Chromosome:chromosome 16
Location:3010468
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663900 HMBS,PBGD1 (1 of 2) 2.5.1.61 - Hydroxymethylbilane synthase / Uroporphyrinogen synthetase; Porphobilinogen deaminase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTCGAACGTATCGATACCGTAGATGAACTGAGCCCCGCGGCCGAGTGA
Internal bar code:ACTGAGACCGGGCAGCGCGAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1569
LEAP-Seq percent confirming:54.3478
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTCTGTGTACATGGCTGT
Suggested primer 2:GCTTTTGACTTGACGCGTGT