Gene: Cre16.g663900
Overview
| Common name: | HMBS,PBGD1 |
| Defline: | (1 of 2) 2.5.1.61 - Hydroxymethylbilane synthase / Uroporphyrinogen synthetase; Porphobilinogen deaminase |
| Description: | Porphobilinogen deaminase, chloroplast precursor; Hydroxymethylbilane synthase; Pre-uroporphyrinogen synthase; PBG; HMBS; HEM3; HEMC; Predicted chloroplast transit peptide 1-34 [PMID: 1986793; PMID: 8192681; PMID: 15849308] |
| Synonyms: | Cre16.g663900.t1.1,g16030.t1,HMBS |
| Chromosome: | chromosome 16 |
Protein Localization
A plasmid for expressing Cre16.g663900 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre16.g663900-Venus-3xFLAG
Imaged strain: CSI_LW06B6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/not pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002295_1 | CLIP2.002295 | 3'UTR | 80 | 6.1 |
| CLIP2.002295_2 | CLIP2.002295 | 3'UTR | 80 | 6.1 |
| CLIP2.003877_1 | CLIP2.003877 | 3'UTR | 80 | 6.1 |
| CLIP2.003877_2 | CLIP2.003877 | 3'UTR | 80 | 6.1 |
| CLIP2.005385_1 | CLIP2.005385 | 3'UTR | 80 | 6.1 |
| CLIP2.005385_2 | CLIP2.005385 | 3'UTR | 80 | 6.1 |
| CLIP2.005456_1 | CLIP2.005456 | 3'UTR | 80 | 6.1 |
| CLIP2.005456_2 | CLIP2.005456 | 3'UTR | 80 | 6.1 |
| CLIP2.005463_1 | CLIP2.005463 | 3'UTR | 80 | 6.1 |
| CLIP2.005463_2 | CLIP2.005463 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.203780_1 | LMJ.RY0402.203780 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.203780_2 | LMJ.RY0402.203780 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF01379, PF03900 |
| PANTHER: | PTHR11557 |
| KEGG_ec: | EC:2.5.1.61 |
| KEGG_orthology: | K01749 |
| KOG: | KOG2892 |
| Gene ontology terms:: | GO:0004418, GO:0033014 |
| Best arabidopsis TAIR name: | AT5G08280 |
| Best arabidopsis TAIR symbol: | HEMC |
| Best arabidopsis TAIR defline: | hydroxymethylbilane synthase |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.