Insertion junction: CLIP2.004035_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004035
Chromosome:chromosome 13
Location:4125151
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591100 MSCL3,MSC5 (1 of 1) IPR000104//IPR002048//IPR006685//IPR010920 - Antifreeze protein, type I // EF-hand domain // Mechanosensitive ion channel MscS // LSM domain; Predicted protein with mechanosensitive ion channel domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCGCGGCGGTGGCGGCGGCACCGCCGCCATCTGCGCGCCTCCTTCCAC
Internal bar code:TCAATCGTTTTGTGCAAAATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1082
LEAP-Seq percent confirming:95.6522
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCACGCATCGGCCTAAT
Suggested primer 2:TTACACCCACCCCCAAACAC