Insertion junction: CLIP2.004097_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.004097
Chromosome:chromosome 13
Location:2346848
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579050 APC1 (1 of 4) IPR002020 - Citrate synthase; Chlamydomonas specific family protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTGATAGAACGCGGCGCTCATCGGTGAATCATTCCTCCGGACAGACCT
Internal bar code:TCGCGTAGACACATCGGCCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2316
LEAP-Seq percent confirming:94.8052
LEAP-Seq n confirming:73
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:AAAAGCTTGAACACGGTCGC
Suggested primer 2:GAGCGCGCTATGAAATGCAA