Insertion junction: CLIP2.004206_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004206
Chromosome:chromosome 12
Location:2200402
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g509050 PPL1,PSBP3 PsbP-like protein of thylakoid lumen; (1 of 1) PTHR31407:SF4 - PSBP-LIKE PROTEIN 1, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCGTGCAGGTGGCCGAGACCCTGGCGAAGGACGTGCTGACCGCCCCCG
Internal bar code:CGGCGTTGCAGTGGATACAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2623
LEAP-Seq percent confirming:96.7742
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:62

Suggested primers for confirmation by PCR

Suggested primer 1:GCATGTAGCAATGTGGCGAG
Suggested primer 2:GCAGCAAACCCGTGAACAAT