Insertion junction: CLIP2.004358_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004358
Chromosome:chromosome 2
Location:6431573
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g388372 RAT2,OPR39 tscA RNA stabilization factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCTGCACCTGCTAGCCGCTTGCTTCGGTGCCCAACCGGGACCTGATCG
Internal bar code:GATGCCTCGGGTGCTAAGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:558
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCACTCCAAGAAGCTGAC
Suggested primer 2:GCATAAGGTCAGCTTTGCGG