Gene: Cre09.g388372

Overview

Common name:	RAT2,OPR39
Defline:	tscA RNA stabilization factor
Description:	OctotricoPeptide (octotricoPeptide) Repeat (OPR) Protein; stabilizes tscA mRNA to allow psaA trans-splicing; component of psaA trans-splicing subcomplex I
Synonyms:	Cre09.g388372.t1.1,OPR39,g9533.t1
Chromosome:	chromosome 2 (genome version v6.1), chromosome 9 (genome version v5.5)

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.003240_1	CLIP2.003240	CDS	80	6.1
CLIP2.003240_2	CLIP2.003240	CDS	80	6.1
CLIP2.003361_1	CLIP2.003361	CDS	80	6.1
CLIP2.003361_2	CLIP2.003361	CDS	80	6.1
CLIP2.004269_1	CLIP2.004269	CDS	80	6.1
CLIP2.004358_2	CLIP2.004358	intron	80	6.1
CLIP2.004358_3	CLIP2.004358	intron	80	6.1
CLIP2.004510_1	CLIP2.004510	CDS	80	6.1
CLIP2.004510_2	CLIP2.004510	CDS	80	6.1
CLIP2.004996_1	CLIP2.004996	CDS	80	6.1
CLIP2.073673_1	CLIP2.073673	intron	63	6.1
LMJ.RY0402.047571_1	LMJ.RY0402.047571	CDS	58	5.5
LMJ.RY0402.053852_1	LMJ.RY0402.053852	intron	73	5.5
LMJ.RY0402.058905_1	LMJ.RY0402.058905	CDS	95	5.5
LMJ.RY0402.058905_2	LMJ.RY0402.058905	intron	95	5.5
LMJ.RY0402.061941_1	LMJ.RY0402.061941	intron	95	5.5
LMJ.RY0402.061941_2	LMJ.RY0402.061941	intron	95	5.5
LMJ.RY0402.094759_2	LMJ.RY0402.094759	CDS	73	5.5
LMJ.RY0402.170533_1	LMJ.RY0402.170533	intron	73	5.5
LMJ.RY0402.173546_1	LMJ.RY0402.173546	intron	95	5.5
LMJ.RY0402.173546_2	LMJ.RY0402.173546	intron	95	5.5
LMJ.RY0402.192784_1	LMJ.RY0402.192784	3'UTR	95	5.5
LMJ.RY0402.192784_2	LMJ.RY0402.192784	3'UTR	95	5.5
LMJ.RY0402.202271_1	LMJ.RY0402.202271	intron	73	5.5
LMJ.RY0402.229675_1	LMJ.RY0402.229675	3'UTR	73	5.5

Gene Annotations

PFAM:
PANTHER:	PTHR21228
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

High light, screen 2 of 2 ( 82% confidence (FDR = 0.18))

Low iron media, screen 1 of 1 ( 89% confidence (FDR = 0.11))

Photosynthesis, screen 3 of 5 ( 86% confidence (FDR = 0.14))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.