Insertion junction: CLIP2.004598_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.004598
Chromosome:chromosome 3
Location:6545681
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194200 PDH2 Pyruvate dehydrogenase E1 beta subunit; (1 of 1) PTHR11624//PTHR11624:SF76 - DEHYDROGENASE RELATED // PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED 3'UTR
Cre03.g194250 (1 of 1) K05609 - ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12] (UCHL3, YUH1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAAAAACACGGCGAGCGTTCATCTCCGACCCCTCGACACTTCGAGGCCG
Internal bar code:TTTTCCCAGACCTCTCTAGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:959
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GATAGGAGGCAGTAGCAGCG
Suggested primer 2:GGCCTTGCCGATGAGGATAA