| Common name: | PDH2 |
| Defline: | Pyruvate dehydrogenase E1 beta subunit; (1 of 1) PTHR11624//PTHR11624:SF76 - DEHYDROGENASE RELATED // PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED |
| Description: | Putative Pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase E1 beta subunit, probably plastid precursor; similar to Arabidopsis PDH E1 beta (GenBank NP_174304) and predicted organelle targeting sequence by Target-P |
| Synonyms: | g4019.t1,PDH2,Cre03.g194200.t1.1 |
| Chromosome: | chromosome 3 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001720_1 | CLIP2.001720 | CDS | 80 | 6.1 |
| CLIP2.001720_2 | CLIP2.001720 | CDS | 80 | 6.1 |
| CLIP2.002764_1 | CLIP2.002764 | 3'UTR | 80 | 6.1 |
| CLIP2.002764_2 | CLIP2.002764 | 3'UTR | 80 | 6.1 |
| CLIP2.003348_1 | CLIP2.003348 | 3'UTR | 80 | 6.1 |
| CLIP2.003348_2 | CLIP2.003348 | 3'UTR | 80 | 6.1 |
| CLIP2.003886_1 | CLIP2.003886 | intron | 80 | 6.1 |
| CLIP2.004598_1 | CLIP2.004598 | 3'UTR | 80 | 6.1 |
| CLIP2.004598_2 | CLIP2.004598 | 3'UTR | 80 | 6.1 |
| CLIP2.007044_1 | CLIP2.007044 | 3'UTR | 80 | 6.1 |
| CLIP2.007044_2 | CLIP2.007044 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.061918_1 | LMJ.RY0402.061918 | intron | 73 | 5.5 |
| LMJ.RY0402.094553_1 | LMJ.RY0402.094553 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.107119_1 | LMJ.RY0402.107119 | CDS | 73 | 5.5 |
| LMJ.RY0402.164248_1 | LMJ.RY0402.164248 | intron | 95 | 5.5 |
| LMJ.RY0402.164248_2 | LMJ.RY0402.164248 | intron | 95 | 5.5 |
| LMJ.RY0402.165919_2 | LMJ.RY0402.165919 | CDS | 73 | 5.5 |
| LMJ.RY0402.223496_1 | LMJ.RY0402.223496 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.232697_1 | LMJ.RY0402.232697 | intron | 95 | 5.5 |
| LMJ.RY0402.232697_2 | LMJ.RY0402.232697 | intron | 95 | 5.5 |
| PFAM: | PF02779, PF02780 |
| PANTHER: | PTHR11624 PTHR11624:SF76 |
| KEGG_ec: | EC:1.2.4.1 |
| KEGG_orthology: | K00162 |
| KOG: | KOG0524 |
| Gene ontology terms:: | GO:0003824, GO:0008152 |
| Best arabidopsis TAIR name: | AT1G30120 |
| Best arabidopsis TAIR symbol: | PDH-E1 BETA |
| Best arabidopsis TAIR defline: | pyruvate dehydrogenase E1 beta |
| Phytozome Locus Page |
Mutants in this gene exhibit a phenotype under the following conditions:
| Carbon concentrating mechanism, screen 8 of 11 ( 99% confidence (FDR = 0.0024)) |
| Carbon concentrating mechanism, screen 9 of 11 ( 99% confidence (FDR = 0.0019)) |
| Carbon concentrating mechanism, screen 10 of 11 ( 82% confidence (FDR = 0.18)) |
| Carbon concentrating mechanism, screen 11 of 11 ( 97% confidence (FDR = 0.021)) |
| Photosynthesis, screen 1 of 5 ( 78% confidence (FDR = 0.22)) |
| Photosynthesis, screen 3 of 5 ( 99% confidence (FDR = 0.0078)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.