Insertion junction: CLIP2.004600_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004600
Chromosome:chromosome 10
Location:2259092
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433950 (1 of 2) PTHR33222:SF3 - PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCAAACTGTAGGCATTCTGCTCAGCCTGAAACCTTGTCTGCCCTCCTGT
Internal bar code:CGGCGGTGATTGGCTCGAGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1532
LEAP-Seq percent confirming:97.561
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAATTGCACACGGCCAAA
Suggested primer 2:CGATCCTCGTCGTGTACAGG