Insertion junction: CLIP2.004920_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.004920
Chromosome:chromosome 3
Location:8363323
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g198950 CGL30 (1 of 3) PTHR31407//PTHR31407:SF18 - FAMILY NOT NAMED // PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC; Conserved in the Green Lineage 3'UTR
Cre03.g800397 (1 of 1) K18735 - protein SMG9 (SMG9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCGATCTAAAGCCACGTGCATGCACCGCTACCTCATACCTGTTATACC
Internal bar code:CCTACCCGCTTATAAGAGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:300
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGGGAGCTGAAGAACCAT
Suggested primer 2:TCCTGTGTGCTCTTGCGATT