Insertion junction: CLIP2.004920_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.004920
Chromosome:chromosome 3
Location:8363337
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g198950 CGL30 (1 of 3) PTHR31407//PTHR31407:SF18 - FAMILY NOT NAMED // PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC; Conserved in the Green Lineage 3'UTR
Cre03.g800397 (1 of 1) K18735 - protein SMG9 (SMG9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGGGATTGGGGGTTTGAGAGATTCCACGTGTGTGCGTTTCGTGGCTGCA
Internal bar code:GCCGATATTCTGGTTGATATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2279
LEAP-Seq percent confirming:71.7391
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTGTGTGCTCTTGCGATT
Suggested primer 2:GCAGGGAGCTGAAGAACCAT