Insertion junction: CLIP2.004938_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.004938
Chromosome:chromosome 10
Location:2552709
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g436350 SHK5,SHKF1 (1 of 1) 2.7.1.71 - Shikimate kinase; Shikimate kinase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAGTGGGAAGGGGAAGGTAGAGGGGAGAGGGGCAGCGCGGTGCTGTGGG
Internal bar code:CTTTTACTTTCGTATCCAGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2155
LEAP-Seq percent confirming:97.9167
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:TCCCTCCTCAGAGTCTGTCG
Suggested primer 2:CTCTTCTCCCCTCGTCCTCA