Gene: Cre10.g436350
Overview
| Common name: | SHK5,SHKF1 |
| Defline: | (1 of 1) 2.7.1.71 - Shikimate kinase; Shikimate kinase |
| Description: | possible shikimate kinase (EC 2.7.1.71); based on similarity to rice shikimate kinase (GenBank BAD83413); predicted plastid location by Target-P and by homology |
| Synonyms: | g10758.t1,SHK5,SHKF1 |
| Chromosome: | chromosome 10 |
Protein Localization
A plasmid for expressing Cre10.g436350 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre10.g436350-Venus-3xFLAG
Imaged strain: CSI_LW05E6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001382_1 | CLIP2.001382 | 3'UTR | 80 | 6.1 |
| CLIP2.001382_2 | CLIP2.001382 | 3'UTR | 80 | 6.1 |
| CLIP2.004938_2 | CLIP2.004938 | 3'UTR | 80 | 6.1 |
| CLIP2.004938_3 | CLIP2.004938 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.162167_2 | LMJ.RY0402.162167 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.196417_2 | LMJ.RY0402.196417 | intron | 95 | 5.5 |
| LMJ.RY0402.196417_3 | LMJ.RY0402.196417 | intron | 95 | 5.5 |
| LMJ.RY0402.201278_1 | LMJ.RY0402.201278 | gene_edge/mRNA_edge/3'UTR | 73 | 5.5 |
| LMJ.RY0402.214947_1 | LMJ.RY0402.214947 | CDS | 95 | 5.5 |
| LMJ.RY0402.214947_2 | LMJ.RY0402.214947 | CDS | 95 | 5.5 |
Gene Annotations
| PFAM: | PF13238 |
| PANTHER: | PTHR21087 PTHR21087:SF8 |
| KEGG_ec: | EC:2.7.1.71 |
| KEGG_orthology: | K00891 |
| KOG: | KOG3347 |
| Gene ontology terms:: | GO:0004765, GO:0005524 |
| Best arabidopsis TAIR name: | AT2G21940 |
| Best arabidopsis TAIR symbol: | ATSK1,SK1 |
| Best arabidopsis TAIR defline: | shikimate kinase 1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.