Insertion junction: LMJ.RY0402.196417_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.196417
Chromosome:chromosome 10
Location:2509792
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre10.g436350 SHK5,SHKF1 (1 of 1) 2.7.1.71 - Shikimate kinase; Shikimate kinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCACCTCCTCCATTCACTCCCACGCTCCC
Internal bar code:GCAAGGATTGAACATCGGGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:806
LEAP-Seq percent confirming:99.4859
LEAP-Seq n confirming:2322
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTGTGTACTGAGTGCGGC
Suggested primer 2:GCATGGTCAGTTGTGTGGTC