Insertion junction: CLIP2.005017_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005017
Chromosome:chromosome 7
Location:427386
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g315100 (1 of 2) 1.5.4.1 - Pyrimidodiazepine synthase intron
lncRNA_TCONS_00046952 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGTTGCTGCTGTGTTTTGGCCCCAACCAATGTTGGCAACAATGAAGCC
Internal bar code:GGAATATTCGAGGGTTCAAAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2491
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTACCGCGCCATACCAAG
Suggested primer 2:TTGAGGCTACCGTGGGGATA