Insertion junction: CLIP2.005151_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005151
Chromosome:chromosome 3
Location:6023516
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189800 CYN38 Cyclophilin 38; (1 of 1) PTHR11071//PTHR11071:SF236 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACGTTAGAAAGTAGGTGGCTGTATACGGACCTCGTTTGTGCCTGCCACT
Internal bar code:GTCGTTCATCTCATCGGAAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:303
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GTCTTGTGCAGTTGCCCTTG
Suggested primer 2:GCCTTGACAAAGACTGCGTG