Gene: Cre03.g189800
Overview
| Common name: | CYN38 |
| Defline: | Cyclophilin 38; (1 of 1) PTHR11071//PTHR11071:SF236 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC |
| Description: | Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen rotamase); found in thylakoid proteome based on mass spectrometric identification of multiple peptides [PMID: 17078018]; based on homology and RR motif, probably located in |
| Synonyms: | Cre03.g189800.t1.1,CYN38,g3930.t1 |
| Chromosome: | chromosome 3 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_LW09B1
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/not homogeneous/not pyrenoid depleted/enriched around pyrenoid
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002143_1 | CLIP2.002143 | intron | 80 | 6.1 |
| CLIP2.002143_2 | CLIP2.002143 | intron | 80 | 6.1 |
| CLIP2.003965_1 | CLIP2.003965 | outside_mRNA | 80 | 6.1 |
| CLIP2.003965_2 | CLIP2.003965 | outside_mRNA | 80 | 6.1 |
| CLIP2.004290_1 | CLIP2.004290 | CDS | 80 | 6.1 |
| CLIP2.004290_2 | CLIP2.004290 | CDS | 80 | 6.1 |
| CLIP2.005151_1 | CLIP2.005151 | outside_mRNA | 80 | 6.1 |
| CLIP2.005151_2 | CLIP2.005151 | outside_mRNA | 80 | 6.1 |
| CLIP2.005683_1 | CLIP2.005683 | intron | 80 | 6.1 |
| CLIP2.007718_1 | CLIP2.007718 | outside_mRNA | 80 | 6.1 |
| LMJ.RY0402.130256_1 | LMJ.RY0402.130256 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.165479_2 | LMJ.RY0402.165479 | CDS | 73 | 5.5 |
Gene Annotations
| PFAM: | PF00160 |
| PANTHER: | PTHR11071 PTHR11071:SF236 |
| KEGG_ec: | EC:5.2.1.8 |
| KEGG_orthology: | |
| KOG: | KOG0881 |
| Gene ontology terms:: | GO:0000413, GO:0003755, GO:0006457 |
| Best arabidopsis TAIR name: | AT3G01480 |
| Best arabidopsis TAIR symbol: | ATCYP38,CYP38 |
| Best arabidopsis TAIR defline: | cyclophilin 38 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.