Insertion junction: CLIP2.005250_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005250
Chromosome:chromosome 3
Location:4426137
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g175250 SQS,SQS1 Squalene synthase; (1 of 1) 2.5.1.21 - Squalene synthase / Squalene synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAGACCTCTCTGCAGACCCGATCCCGTGCGGTCTCGACTTTGTAGGAGG
Internal bar code:CGGTAATTTATGCTTTGGGCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1095
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GTCAAGGCAGGTGGTATGCT
Suggested primer 2:ATGCAGCTGGTGGGTAAGAC