Insertion junction: CLIP2.005355_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005355
Chromosome:chromosome 1
Location:4089346
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g027150 CPLD46,HEL5 Conserved in the plant lineage and diatoms; (1 of 2) PTHR24031//PTHR24031:SF249 - RNA HELICASE // ATP-DEPENDENT DNA HELICASE RECG intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAATGGCCGTACCTTGCACCCGCCAACGACAACCCTCGTCTTCTTCGCT
Internal bar code:TACCAGTAATATTTTAAATCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1329
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CGTAGGGCTCGGTCACATAC
Suggested primer 2:GAAGGAAGACGGGTTGAGGG