Gene: Cre01.g027150

Overview

Common name:	CPLD46,HEL5
Defline:	Conserved in the plant lineage and diatoms; (1 of 2) PTHR24031//PTHR24031:SF249 - RNA HELICASE // ATP-DEPENDENT DNA HELICASE RECG
Description:	Putative DEAD/DEAH-box helicase, possibly plastid targeted; Identified as HEL5 in the GreenCut;
Synonyms:	g621.t1,HEL5,CPLD46
Chromosome:	chromosome 1

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.001605_1	CLIP2.001605	intron	80	6.1
CLIP2.001605_2	CLIP2.001605	intron	80	6.1
CLIP2.003812_1	CLIP2.003812	CDS	80	6.1
CLIP2.003812_2	CLIP2.003812	CDS	80	6.1
CLIP2.003847_1	CLIP2.003847	CDS	80	6.1
CLIP2.003847_2	CLIP2.003847	CDS	80	6.1
CLIP2.005355_1	CLIP2.005355	intron	80	6.1
CLIP2.006101_1	CLIP2.006101	intron	80	6.1
CLIP2.006101_2	CLIP2.006101	intron	80	6.1
CLIP2.006962_1	CLIP2.006962	intron	80	6.1
CLIP2.006962_2	CLIP2.006962	intron	80	6.1
CLIP2.061179_1	CLIP2.061179	3'UTR	80	6.1
CLIP2.061179_2	CLIP2.061179	3'UTR	80	6.1
CLIP2.061179_3	CLIP2.061179	3'UTR	80	6.1
CLIP2.061208_1	CLIP2.061208	5'UTR	80	6.1
CLIP2.074236_1	CLIP2.074236	5'UTR	80	6.1
CLIP2.075430_1	CLIP2.075430	3'UTR	80	6.1
LMJ.RY0402.055477_1	LMJ.RY0402.055477	3'UTR	95	5.5
LMJ.RY0402.055477_2	LMJ.RY0402.055477	3'UTR	95	5.5
LMJ.RY0402.063621_1	LMJ.RY0402.063621	intron	95	5.5
LMJ.RY0402.063621_2	LMJ.RY0402.063621	intron	95	5.5
LMJ.RY0402.106172_1	LMJ.RY0402.106172	3'UTR	95	5.5
LMJ.RY0402.106172_2	LMJ.RY0402.106172	3'UTR	95	5.5
LMJ.RY0402.127458_1	LMJ.RY0402.127458	intron	73	5.5
LMJ.RY0402.163864_1	LMJ.RY0402.163864	intron	95	5.5
LMJ.RY0402.163864_2	LMJ.RY0402.163864	intron	95	5.5
LMJ.RY0402.177446_1	LMJ.RY0402.177446	CDS	73	5.5
LMJ.RY0402.182888_1	LMJ.RY0402.182888	3'UTR	73	5.5
LMJ.RY0402.202306_1	LMJ.RY0402.202306	intron	95	5.5
LMJ.RY0402.202306_2	LMJ.RY0402.202306	intron	95	5.5
LMJ.RY0402.217911_1	LMJ.RY0402.217911	3'UTR	95	5.5
LMJ.RY0402.217911_2	LMJ.RY0402.217911	3'UTR	95	5.5
LMJ.RY0402.217911_3	LMJ.RY0402.217911	3'UTR	95	5.5
LMJ.RY0402.234812_1	LMJ.RY0402.234812	intron	95	5.5
LMJ.RY0402.234812_2	LMJ.RY0402.234812	intron	95	5.5
LMJ.RY0402.234812_3	LMJ.RY0402.234812	intron	95	5.5
LMJ.RY0402.235870_1	LMJ.RY0402.235870	CDS	58	5.5
LMJ.RY0402.238007_1	LMJ.RY0402.238007	CDS	95	5.5
LMJ.RY0402.238007_2	LMJ.RY0402.238007	CDS	95	5.5
LMJ.SG0182.017627_1	LMJ.SG0182.017627	3'UTR	75	5.3

Gene Annotations

PFAM:	PF00270, PF08148
PANTHER:	PTHR24031 PTHR24031:SF249
KEGG_ec:	EC:3.6.4.13
KEGG_orthology:
KOG:	KOG0947
Gene ontology terms::	GO:0003676, GO:0005524
Best arabidopsis TAIR name:	AT1G70070
Best arabidopsis TAIR symbol:	EMB25,ISE2,PDE317
Best arabidopsis TAIR defline:	DEAD/DEAH box helicase, putative
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis, screen 1 of 5 ( 97% confidence (FDR = 0.028))

Photosynthesis, screen 2 of 5 ( 94% confidence (FDR = 0.052))

Photosynthesis, screen 3 of 5 ( 99% confidence (FDR = 0.00037))

Photosynthesis, screen 4 of 5 ( 93% confidence (FDR = 0.062))

Photosynthesis, screen 5 of 5 ( 99% confidence (FDR = 0.00039))

Photosynthesis or light sensitivity, screen 1 of 12 ( 74% confidence (FDR = 0.26))

Photosynthesis or light sensitivity, screen 2 of 12 ( 99% confidence (FDR = 0.0052))

Photosynthesis or light sensitivity, screen 3 of 12 ( 99% confidence (FDR = 0.0013))

Photosynthesis or light sensitivity, screen 4 of 12 ( 99% confidence (FDR = 0.0017))

Photosynthesis or light sensitivity, screen 5 of 12 ( 99% confidence (FDR = 0.00017))

Photosynthesis or light sensitivity, screen 6 of 12 ( 99% confidence (FDR = 1.2e-06))

Photosynthesis or light sensitivity, screen 7 of 12 ( 99% confidence (FDR = 4.1e-07))

Photosynthesis or light sensitivity, screen 8 of 12 ( 99% confidence (FDR = 8.9e-08))

Photosynthesis or light sensitivity, screen 9 of 12 ( 99% confidence (FDR = 3.1e-05))

Photosynthesis or light sensitivity, screen 10 of 12 ( 99% confidence (FDR = 5.8e-07))

Photosynthesis or light sensitivity, screen 11 of 12 ( 99% confidence (FDR = 1.5e-06))

Photosynthesis or light sensitivity, screen 12 of 12 ( 99% confidence (FDR = 5.2e-05))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.