Insertion junction: CLIP2.005398_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005398
Chromosome:chromosome 16
Location:6781971
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g672300 (1 of 1) PTHR13711//PTHR13711:SF182 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED; High mobility group protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGAAATCTTTGCCTGCATTCCGCGCACTTGGTGTCGACGTATTGCAAAC
Internal bar code:ATGTCTAGAGGATCCCTTTAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1493
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:TGAAGGCAAGGGGTGTGTTT
Suggested primer 2:ATAAACTGGGTGCAGCCTCC