Gene: Cre16.g672300
Overview
| Common name: | |
| Defline: | (1 of 1) PTHR13711//PTHR13711:SF182 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED; High mobility group protein |
| Description: | High mobility group protein, non-histone component of chromatin. ChromoDB HMGB345 |
| Synonyms: | g16681.t1,Cre16.g672300.t1.1 |
| Chromosome: | chromosome 16 |
Protein Localization
A plasmid for expressing Cre16.g672300 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre16.g672300-Venus-3xFLAG
Imaged strain: CSI_LW03B10
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/chloroplast punctate dots
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre16.g672300 | Cre01.g018200 | Wang et al. 2023 | ||
| Cre16.g672300 | Cre03.g162150 | Wang et al. 2023 | ||
| Cre16.g672300 | Cre03.g178600 | TOP1 | Wang et al. 2023 | |
| Cre16.g672300 | Cre03.g180800 | HDA16 | Wang et al. 2023 | |
| Cre16.g672300 | Cre06.g285401 | HLP1,FAP355 | Wang et al. 2023 | |
| Cre16.g672300 | Cre08.g380151 | Wang et al. 2023 | ||
| Cre16.g672300 | Cre13.g570050 | HTB20,HTB2 | Wang et al. 2023 | |
| Cre16.g672300 | Cre16.g672300 | Wang et al. 2023 | ||
| Cre16.g672300 | Cre17.g702650 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001379_1 | CLIP2.001379 | 5'UTR | 80 | 6.1 |
| CLIP2.004100_1 | CLIP2.004100 | CDS | 80 | 6.1 |
| CLIP2.004100_2 | CLIP2.004100 | CDS | 80 | 6.1 |
| CLIP2.005398_1 | CLIP2.005398 | 5'UTR | 80 | 6.1 |
| CLIP2.005398_2 | CLIP2.005398 | 5'UTR | 80 | 6.1 |
| CLIP2.005769_2 | CLIP2.005769 | CDS | 80 | 6.1 |
| CLIP2.006546_1 | CLIP2.006546 | intron | 63 | 6.1 |
Gene Annotations
| PFAM: | PF00505 |
| PANTHER: | PTHR13711 PTHR13711:SF182 |
| KEGG_ec: | |
| KEGG_orthology: | K10802 |
| KOG: | KOG0381 |
| Gene ontology terms:: | GO:0003677 |
| Best arabidopsis TAIR name: | AT4G11080.1 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | HMG (high mobility group) box protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.