Insertion junction: CLIP2.005451_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005451
Chromosome:chromosome 2
Location:6229391
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387000 CGL34 (1 of 4) PF11891 - Domain of unknown function (DUF3411) (DUF3411); Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCCCCTAATTAATATACGAGTCTTATAGAAGCACAATTTACGTCAACGG
Internal bar code:AGGATCGTGTCTAGCTCAACAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2134
LEAP-Seq percent confirming:82.9787
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGCCCACGAATGCCTACA
Suggested primer 2:CATGTGTGTTGGTGGCTGTG